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Publications

Data scientist analysing information

Browse a collection of academic publications and research papers, contributed to by personnel from the Unit.

A large population sample of African HIV genomes from the 1980s reveals a reduction in subtype D over time associated with propensity for CXCR4 tropism.
Grant, HE; Roy, S; Williams, R; Tutill, H; Ferns, B; Cane, PA; Carswell, JW; SSEMWANGA, D; KALEEBU, P; Breuer, J; Leigh Brown, AJ;
2022
Retrovirology, (2022).19 1 10.1186/s12977-022-00612-5.
The benefits of care: treated HIV infection and health-related quality of life among older-aged people in Uganda.
Quach, LT; Ritchie, CS; Tsai, AC; Reynolds, Z; Paul, R; SEELEY, J; Tong, Y; Hoeppner, S; Okello, S; Nakasujja, N; Olivieri-Mui, B; Saylor, D; Greene, M; Asiimwe, S; Siedner, MJ;
2022
Aging & Mental Health, (2022).27 9 10.1080/13607863.2022.2150143.
Policy and Guideline Review of Vaccine Safety for COVID-19 in Pregnant Women in Southern Africa, with a Particular Focus on South Africa.
Chimukuche, RS; Nkosi, B; SEELEY, J;
2022
Vaccines, (2022).10 12 10.3390/vaccines10122077.
Women living with HIV, diabetes and/or hypertension multi-morbidity in Uganda: a qualitative exploration of experiences accessing an integrated care service.
Van Hout, MC A; Zalwango, F; Akugizibwe, M; Namulundu Chaka, M; Bigland, C; BIRUNGI, J; Jaffar, S; Bachmann, M; Murdoch, J;
2022
Journal of Integrated Care, (2022).31 1 10.1108/jica-06-2022-0033.
Assessment of a diverse panel of transmitted/founder HIV-1 infectious molecular clones in a luciferase based CD8 T-cell mediated viral inhibition assay.
Fernandez, N; Hayes, P; Makinde, J; Hare, J; King, D; Xu, R; Rehawi, O; Mezzell, AT; Kato, L; Mugaba, S; SERWANGA, J; Chemweno, J; Nduati, E; Price, MA; Osier, F; Ochsenbauer, C; Yue, L; Hunter, E; Gilmour, J; IAVI protocol C investigators,;
2022
Frontiers in immunology, (2022).13, 10.3389/fimmu.2022.1029029.
QuasiFlow: a Nextflow pipeline for analysis of NGS-based HIV-1 drug resistance data.
Ssekagiri, A; Jjingo, D; Lujumba, I; BBOSA, N; Bugembe, DL; Kateete, DP; Jordan, IK; KALEEBU, P; SSEMWANGA, D;
2022
Bioinformatics advances, (2022).2 1 10.1093/bioadv/vbac089.
Is hope associated with HIV-acquisition risk and intimate partner violence amongst young women and men? A cross-sectional study in urban informal settlements in South Africa.
Gibbs, A; Desmond, C; Barnett, T; Shahmanesh, M; SEELEY, J;
2022
AIDS Care, (2022).35 6 10.1080/09540121.2022.2143470.
Mental health challenges and perceived risks among female sex Workers in Nairobi, Kenya.
PANNEH, M; GAFOS, M; Nyariki, E; Liku, J; SHAH, P; Wanjiru, R; Wanjiru, M; Beksinska, A; Pollock, J; Maisha Fiti Study Champions,; Jama, Z; Babu, H; Kaul, R; SEELEY, J; BRADLEY, J; Kimani, J; BEATTIE, T;
2022
BMC public health, (2022).22 1 10.1186/s12889-022-14527-5.
High-resolution African HLA resource uncovers HLA-DRB1 expression effects underlying vaccine response: summary statistics.
Mentzer, A; Dilthey, A; Pollard, M; Gurdasani, D; Karakoc, E; Carstensen, T; Muhwezi, A; Cutland, C; Diarra, A; Da Silva Antunes, R; Paul, S; Smits, G; Wareing, S; Kim, H; Pomilla, C; Chong, A; Brandt, D; Nielsen, R; Neaves, S; Timpson, N; Crinklaw, A; Arlehamn, C; Rautanen, A; Kizito, D; Parks, T; ... Sandhu, M.
2022
, Zenodo (2022).
Short-term oral pre-exposure prophylaxis against HIV-1 modulates the transcriptome of foreskin tissue in young men in Africa.
Petkov, S; Herrera, C; Else, L; Lebina, L; Opoka, D; Seiphetlo, TB; Pillay, A-DA; Mugaba, S; Namubiru, P; Odoch, G; SSEMATA, AS; SERWANGA, J; KALEEBU, P; WEBB, EL; Khoo, S; Martinson, N; Gray, CM; Fox, J; Chiodi, F;
2022
Frontiers in immunology, (2022).13, 10.3389/fimmu.2022.1009978.