Publications

Browse a collection of academic publications and research papers, contributed to by personnel from the Unit.

Title

Author

Year

Protocol for the COG-UK hospital-onset COVID-19 infection (HOCI) multicentre interventional clinical study: evaluating the efficacy of rapid genome sequencing of SARS-CoV-2 in limiting the spread of COVID-19 in UK NHS hospitals.

Blackstone, J; Stirrup, O; Mapp, F; Panca, M; Copas, A; Flowers, P; Hockey, L; Price, J; Partridge, D; Peters, C; DE SILVA, T; Nebbia, G; Snell, LB; McComish, R; COVID-19 Genomics UK (COG-UK) Consortium,; Breuer, J;

2022

BMJ open, (2022).12 4 10.1136/bmjopen-2021-052514.

Climate change impacts and adaptation strategies for crops in West Africa: a systematic review.

CARR, TW; Mkuhlani, S; Segnon, AC; ALI, Z; Zougmoré, R; Dangour, AD; GREEN, R; SCHEELBEEK, P;

2022

Environmental research letters, (2022).17 5 10.1088/1748-9326/ac61c8.

Implementing an antibiogram profile to aid rational antimicrobial therapy and improving infection prevention in an urban hospital in The Gambia; strategies and lessons for low income and middle-income countries.

DARBOE, S; Mirasol, R; Adejuyigbe, B; Muhammad, AK; NADJM, B; De St Maurice, A; Dogan, T; Ceesay, B; Umukoro, S; Okomo, U; Nwakanma, D; Roca, A; Secka, O; FORREST, K; Garner, O;

2022

medRxiv (2022). 10.1101/2022.04.19.22274009.

Comparative Genomics of Disease and Carriage Serotype 1 Pneumococci.

Chaguza, C; Ebruke, C; Senghore, M; Lo, SW; Tientcheu, P-E; Gladstone, RA; Tonkin-Hill, G; Cornick, JE; Yang, M; Worwui, A; McGee, L; Breiman, RF; Klugman, KP; Kadioglu, A; Everett, DB; MACKENZIE, G; Croucher, NJ; ROCA, A; Kwambana-Adams, BA; ANTONIO, M; Bentley, SD;

2022

Genome biology and evolution, (2022).14 4 10.1093/gbe/evac052.

Averting wildlife-borne infectious disease epidemics requires a focus on socio-ecological drivers and a redesign of the global food system.

Wegner, GI; MURRAY, KA; SPRINGMANN, M; Muller, A; Sokolow, SH; Saylors, K; Morens, DM;

2022

eClinicalMedicine, (2022).47, 10.1016/j.eclinm.2022.101386.

Skin microbiome alters attractiveness to Anopheles mosquitoes.

SHOWERING, A; Martinez, J; Benavente, ED; Gezan, SA; JONES, RT; Oke, C; Tytheridge, S; PRETORIUS, E; Scott, D; Allen, RL; D'ALESSANDRO, U; Lindsay, SW; Armour, JA L; Pickett, J; LOGAN, JG;

2022

BMC microbiology, (2022).22 1 10.1186/s12866-022-02502-4.

Grassroots and Youth-Led Climate Solutions From The Gambia.

BONELL, A; Badjie, J; Jammeh, S; ALI, Z; Hydara, M; Davies, A; Faal, M; Ahmed, AN; Hand, W; PRENTICE, AM; MURRAY, KA; SCHEELBEEK, P;

2022

Frontiers in Public Health, (2022).10, 10.3389/fpubh.2022.784915.

Tracking the impacts of climate change on human health via indicators: lessons from the Lancet Countdown.

Di Napoli, C; McGushin, A; Romanello, M; Ayeb-Karlsson, S; Cai, W; Chambers, J; Dasgupta, S; Escobar, LE; Kelman, I; Kjellstrom, T; Kniveton, D; Liu, Y; Liu, Z; LOWE, R; Martinez-Urtaza, J; McMichael, C; Moradi-Lakeh, M; MURRAY, KA; Rabbaniha, M; Semenza, JC; Shi, L; Tabatabaei, M; Trinanes, JA; Vu, BN; BRIMICOMBE, C; ... Robinson, EJ.

2022

BMC Public Health, (2022).22 1 10.1186/s12889-022-13055-6.

A Streptococcus pneumoniae lineage usually associated with pneumococcal conjugate vaccine (PCV) serotypes is the most common cause of serotype 35B invasive disease in South Africa, following routine use of PCV.

Ndlangisa, KM; Du Plessis, M; Lo, S; De Gouveia, L; Chaguza, C; ANTONIO, M; Kwambana-Adams, B; Cornick, J; Everett, DB; Dagan, R; Hawkins, PA; Beall, B; Corso, A; Grassi Almeida, SC; Ochoa, TJ; Obaro, S; Shakoor, S; Donkor, ES; Gladstone, RA; Ho, PL; Paragi, M; Doiphode, S; Srifuengfung, S; Ford, R; Moïsi, J; ... The Global Pneumococcal Sequencing Consortium,

2022

Microbial genomics, (2022).8 4 10.1099/mgen.0.000746.

Exploring the use of UmbiFlow™ to assess the impact of heat stress on fetoplacental blood flow in field studies.

Bonell, A; Vannevel, V; Sonko, B; Mohammed, N; Vicedo-Cabrera, A; Haines, A; Maxwell, N; Hirst, J; PRENTICE, A;

2022

medRxiv (2022). 10.1101/2022.03.31.22273092.