Publications

Evaluation and estimation of epidemic trajectories for SARS-CoV-2 from clinical and wastewater data in Gauteng Province, South Africa.

Mthombothi, ZE; Lison, A; Els, F; Van Schalkwyk, C; Danon, L; Maree, G; Bingham, JL; Gwala, S; Mabasa, V; Singh, N; Phalane, E; Macheke, M; Rachida, S; Ndlovu, N; Sankar, C; Maposa, S; Yousif, M; McCarthy, K; O'REILLY, KM;

2026

PLOS global public health, (2026).6 5 10.1371/journal.pgph.0006424.

Exploring epidemic control policies using nonlinear programming and mathematical models.

Montes-Olivas, S; KUCHARSKI, AJ; Gravenor, MB; Frost, SD W;

2026

PLoS computational biology, (2026).22 5 10.1371/journal.pcbi.1014238.

AMRgen: an R package for antimicrobial resistance genotype-phenotype analysis.

HOLT, KE; Argimón, S; Chaput, DL; Couto, N; DYSON, ZA; FOSTER-NYARKO, E; Goodman, RN; Hawkey, J; KNIGHT, GM; Nagy, D; Prasad, AB; Sánchez-Busó, L; Tsang, KK; Berends, MS;

2026

bioRxiv (2026). 10.64898/2026.05.01.722195.

The 2026 Europe report of the Lancet Countdown on health and climate change: narrowing window for decisive health action.

Kriit, HK; Chen-Xu, J; Semenza, JC; Heiliger, H; Markandya, A; Dasandi, N; Jankin, S; Van Daalen, KR; Achebak, H; Alari, A; Alcayna, T; Ball, E; Ballester, J; Bechara, H; Callaghan, MW; Van Cauwenberghe, M; Charnley, GE C; Courtenay, O; Cirach, M; Garcia-Corral, P; Cross, TJ; Dasgupta, S; Dickson, ZP; Eckelman, MJ; Erfort, C; ... Rocklöv, J.

2026

The Lancet. Public health, (2026).11 6 10.1016/S2468-2667(26)00025-3.

Ethnic inequalities in respiratory virus epidemics in England: a mathematical modelling study.

ROBERT, A; GOODFELLOW, L; Pellis, L; Van Leeuwen, E; EDMUNDS, J; Quilty, B; VAN ZANDVOORT, K; EGGO, R;

2026

medRxiv (2026). 10.64898/2026.04.18.26350858.

Vaccine value profile for severe fever with thrombocytopenia syndrome (SFTS).

SKRIP, L; Hidano, A; Poovorawan, Y; Khongwichit, S; Kato, H; Kapell, S; Abe, M; Jung, S-M; Jit, M; Kim, K-H; Yi, J; Miyazaki, T; Kawaguchi, T; Okabayashi, T; Chae, J-S; Ariyoshi, K; EDMUNDS, WJ; Morita, K;

2026

Vaccine, (2026).82, 10.1016/j.vaccine.2026.128596.

Variables extracted and study-wise data used in the systematic review.

MOGASALE, VV; Zhang, P; John, J; Farooqui, HH; Ray, A; Mogasale, V; Parry, CM; Dhoubhadel, BG; EDMUNDS, WJ; CLARK, A; Abbas, KM;

2026

, PLOS Neglected Tropical Diseases (2026).

Burden of antimicrobial resistance in culture-confirmed Salmonella Typhi isolates in India from 1977 to 2024: A systematic review and meta-analysis.

MOGASALE, VV; Zhang, P; John, J; Farooqui, HH; Ray, A; Mogasale, V; Parry, CM; Dhoubhadel, BG; EDMUNDS, WJ; CLARK, A; ABBAS, K;

2026

PLoS neglected tropical diseases, (2026).20 4 10.1371/journal.pntd.0014206.

Classifying and Differentiating Individuals with Respiratory Syncytial Virus, Influenza, and COVID-19 Cases in OpenSAFELY Between 2016 and 2024.

PRESTIGE, E; WARREN-GASH, C; Quint, JK; Evans, D; Costello, RE; Mehrkar, A; Bacon, S; Goldacre, B; Barley-McMullen, S; Yameen, F; Natt, M; Alder, Y; Hulme, WJ; PARKER, EP K; EGGO, RM;

2026

openRxiv (2026). 10.64898/2026.04.09.26350495.

Acute Febrile Illness Surveillance for Estimating Population Immunity, Dominican Republic, 2021.

Nilles, EJ; Paulino, CT; Vasquez, M; Duke, W; Jarolim, P; Ramm, RS; KUCHARSKI, A; Lau, CL;

2026

Emerging infectious diseases, (2026).32 4 10.3201/eid3204.251205.