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Publications

Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable.
Mavian, C; Pond, SK; Marini, S; Magalis, BR; Vandamme, A-M; Dellicour, S; Scarpino, SV; Houldcroft, C; Villabona-Arenas, J; Paisie, TK; Trovão, NS; Boucher, C; Zhang, Y; Scheuermann, RH; Gascuel, O; Lam, TT-Y; Suchard, MA; Abecasis, A; Wilkinson, E; De Oliveira, T; Bento, AI; Schmidt, HA; Martin, D; Hadfield, J; Faria, N; ... Salemi, M.
2020
Proceedings of the National Academy of Sciences, (2020).117 23 10.1073/pnas.2007295117.
Estimating number of cases and spread of coronavirus disease (COVID-19) using critical care admissions, United Kingdom, February to March 2020.
JIT, M; JOMBART, T; NIGHTINGALE, ES; ENDO, A; ABBOTT, S; LSHTM Centre for Mathematical Modelling of Infecti,; EDMUNDS, WJ;
2020
EUROSURVEILLANCE, (2020).25 18 10.2807/1560-7917.ES.2020.25.18.2000632.
Quantifying the impact of physical distance measures on the transmission of COVID-19 in the UK.
JARVIS, CI; VAN ZANDVOORT, K; Gimma, A; PREM, K; CMMID COVID-19 working group,; KLEPAC, P; Rubin, GJ; EDMUNDS, WJ;
2020
BMC medicine, (2020).18 1 10.1186/s12916-020-01597-8.
Projected early spread of COVID-19 in Africa through 1 June 2020.
PEARSON, CA; Van Schalkwyk, C; FOSS, AM; O'REILLY, KM; SACEMA Modelling and Analysis Response Team,; CMMID COVID-19 working group,; Pulliam, JR;
2020
Eurosurveillance, (2020).25 18 10.2807/1560-7917.ES.2020.25.18.2000543.
The economic burden of cervical cancer from diagnosis to one year after final discharge in Henan Province, China: A retrospective case series study.
Wu, Q; Jia, M; Chen, H; Zhang, S; LIU, Y; PREM, K; Qian, M; Yu, H;
2020
PLOS ONE, (2020).15 5 10.1371/journal.pone.0232129.
Modelling COVID-19.
Vespignani, A; Tian, H; Dye, C; Lloyd-Smith, JO; EGGO, RM; Shrestha, M; Scarpino, SV; Gutierrez, B; Kraemer, MU G; Wu, J; Leung, K; Leung, GM;
2020
Nature Reviews Physics (2020).
Modelling COVID-19.
Vespignani, A; Tian, H; Dye, C; Lloyd-Smith, JO; EGGO, RM; Shrestha, M; Scarpino, SV; Gutierrez, B; Kraemer, MU G; Wu, J; Leung, K; Leung, GM;
2020
Nature reviews. Physics, (2020).2 6 10.1038/s42254-020-0178-4.
Effective transmission across the globe: the role of climate in COVID-19 mitigation strategies.
O'REILLY, KM; AUZENBERGS, M; Jafari, Y; LIU, Y; FLASCHE, S; LOWE, R;
2020
The Lancet. Planetary health, (2020).4 5 10.1016/S2542-5196(20)30106-6.
Cost of illness for childhood diarrhea in low- and middle-income countries: a systematic review of evidence and modelled estimates.
Baral, R; Nonvignon, J; Debellut, F; Agyemang, SA; CLARK, A; Pecenka, C;
2020
BMC public health, (2020).20 1 10.1186/s12889-020-08595-8.
An open source tool to infer epidemiological and immunological dynamics from serological data: serosolver.
Hay, JA; Minter, A; Ainslie, KE C; Lessler, J; Yang, B; Cummings, DA T; KUCHARSKI, AJ; Riley, S;
2020
PLoS computational biology, (2020).16 5 10.1371/journal.pcbi.1007840.