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Publications

Robust barcoding and identification of Mycobacterium tuberculosis lineages for epidemiological and clinical studies.
Napier, G; CAMPINO, S; Merid, Y; Abebe, M; Woldeamanuel, Y; Aseffa, A; HIBBERD, ML; PHELAN, J; CLARK, TG;
2020
GENOME MEDICINE, (2020).12 1 10.1186/s13073-020-00817-3.
Genomic Epidemiology of Carbapenemase Producing Klebsiella pneumoniae Strains at a Northern Portuguese Hospital Enables the Detection of a Misidentified Klebsiella variicola KPC-3 Producing Strain.
Perdigão, J; Caneiras, C; Elias, R; Modesto, A; SPADAR, A; PHELAN, J; CAMPINO, S; CLARK, TG; Costa, E; Saavedra, MJ; Duarte, A;
2020
MICROORGANISMS, (2020).8 12 10.3390/microorganisms8121986.
HIV infection and COVID-19 death: a population-based cohort analysis of UK primary care data and linked national death registrations within the OpenSAFELY platform.
BHASKARAN, K; RENTSCH, CT; MacKenna, B; SCHULTZE, A; Mehrkar, A; Bates, CJ; EGGO, RM; Morton, CE; Bacon, SC J; Inglesby, P; Doughlas, IJ; Walker, AJ; MCDONALD, H; Cockburn, J; WILLIAMSON, EJ; Evans, D; FORBES, HJ; Curtis, HJ; Hulme, WJ; Parry, J; Hester, F; Harper, S; EVANS, SJ W; SMEETH, L; GOLDACRE, B;
2020
LANCET HIV, (2020).8 1 10.1016/S2352-3018(20)30305-2.
o2geosocial.
Robert, A; FUNK, S; KUCHARSKI, AJ;
2020
, Zenodo (2020).
Practical considerations for measuring the effective reproductive number, Rt.
Gostic, KM; McGough, L; Baskerville, EB; ABBOTT, S; Joshi, K; Tedijanto, C; Kahn, R; Niehus, R; Hay, JA; De Salazar, PM; HELLEWELL, J; MEAKIN, S; MUNDAY, JD; BOSSE, NI; Sherrat, K; THOMPSON, RN; White, LF; Huisman, JS; Scire, J; Bonhoeffer, S; Stadler, T; Wallinga, J; FUNK, S; Lipsitch, M; Cobey, S;
2020
PLOS COMPUTATIONAL BIOLOGY, (2020).16 12 10.1371/journal.pcbi.1008409.
From cervical cancer elimination to eradication of vaccine-type human papillomavirus: Feasibility, public health strategies and cost-effectiveness.
JIT, M; PREM, K; Benard, E; Brisson, M;
2020
Preventive medicine, (2020).144, 10.1016/j.ypmed.2020.106354.
The role of schools and school-aged children in SARS-CoV-2 transmission.
FLASCHE, S; EDMUNDS, WJ;
2020
The Lancet. Infectious diseases, (2020).21 3 10.1016/s1473-3099(20)30927-0.
Estimating the time-varying reproduction number of SARS-CoV-2 using national and subnational case counts.
ABBOTT, S; HELLEWELL, J; Thompson, RN; SHERRATT, K; Gibbs, HP; BOSSE, NI; MUNDAY, JD; MEAKIN, S; Doughty, EL; Chun, JY; Chan, Y-WD; Finger, F; Campbell, P; ENDO, A; PEARSON, CA B; Gimma, A; Russell, T; FLASCHE, S; KUCHARSKI, AJ; EGGO, RM; FUNK, S;
2020
Wellcome Open Research, (2020).5, 10.12688/wellcomeopenres.16006.2.
Effect of internationally imported cases on internal spread of COVID-19: a mathematical modelling study.
RUSSELL, TW; Wu, JT; CLIFFORD, S; EDMUNDS, WJ; KUCHARSKI, AJ; JIT, M; Centre for the Mathematical Modelling of Infectiou,;
2020
LANCET PUBLIC HEALTH, (2020).6 1 10.1016/S2468-2667(20)30263-2.
Knowledge, attitudes and practices regarding antimicrobial use and resistance among communities of Ilala, Kilosa and Kibaha districts of Tanzania.
Sindato, C; Mboera, LE G; Katale, BZ; Frumence, G; Kimera, S; CLARK, TG; LEGIDO-QUIGLEY, H; Mshana, SE; Rweyemamu, MM; Matee, M;
2020
ANTIMICROBIAL RESISTANCE AND INFECTION CONTROL, (2020).9 1 10.1186/s13756-020-00862-y.