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Publications

o2geosocial: Reconstructing who-infected-whom from routinely collected surveillance data.
ROBERT, A; FUNK, S; KUCHARSKI, AJ;
2021
F1000Research, (2021).10, 10.12688/f1000research.28073.2.
Estimating the minimum number of SARS-CoV-2 infected cases needed to detect viral RNA in wastewater: To what extent of the outbreak can surveillance of wastewater tell us?.
Hong, P-Y; Rachmadi, AT; Mantilla-Calderon, D; Alkahtani, M; Bashawri, YM; Al Qarni, H; O'REILLY, KM; Zhou, J;
2021
Environmental research, (2021).195, 10.1016/j.envres.2021.110748.
Importance of patient bed pathways and length of stay differences in predicting COVID-19 hospital bed occupancy in England.
LECLERC, QJ; FULLER, NM; KEOGH, RH; DIAZ-ORDAZ, K; Sekula, R; Semple, MG; ISARIC4C Investigators,; CMMID COVID-19 Working Group,; ATKINS, KE; PROCTER, SR; Knight, GM;
2021
BMC health services research, (2021).21 1 10.1186/s12913-021-06509-x.
covidregionaldata: Subnational data for COVID-19 epidemiology.
Palmer, J; Sherratt, K; Martin-Nielsen, R; Bevan, J; Gibbs, H; CMMID COVID-19 Working Group,; FUNK, S; Abbott, S;
2021
, Zenodo (2021).
RISK11 signature scores for the biomarker-guided tuberculosis preventive therapy (CORTIS) randomised controlled trial.
Scriba, TJ; Fiore-Gartland, A; Penn-Nicholson, A; Mulenga, H; Kimbung Mbandi, S; Borate, B; Mendelsohn, SC; Hadley, K; Hikuam, C; Kaskar, M; Musvosvi, M; Bilek, N; Self, S; SUMNER, T; WHITE, RG; Erasmus, M; Jaxa, L; Raphela, R; Innes, C; Brumskine, W; Hiemstra, A; Malherbe, ST; Hassan-Moosa, R; Tameris, M; Walzl, G; ... Hatherill, M.
2021
, University of Cape Town (2021).
RISK11 signature scores for the biomarker-guided tuberculosis preventive therapy (CORTIS) randomised controlled trial.
Scriba, TJ; Fiore-Gartland, A; Penn-Nicholson, A; Mulenga, H; Kimbung Mbandi, S; Borate, B; Mendelsohn, SC; Hadley, K; Hikuam, C; Kaskar, M; Musvosvi, M; Bilek, N; Self, S; SUMNER, T; WHITE, RG; Erasmus, M; Jaxa, L; Raphela, R; Innes, C; Brumskine, W; Hiemstra, A; Malherbe, ST; Hassan-Moosa, R; Tameris, M; Walzl, G; ... Hatherill, M.
2021
, University of Cape Town (2021).
cmmid/SA2UK.
PEARSON, CA B; RUSSELL, TW; KUCHARSKI, AJ;
2021
, Github (2021).
Integrating epidemiological and genetic data with different sampling intensities into a dynamic model of respiratory syncytial virus transmission.
Kombe, IK; Agoti, CN; Munywoki, PK; BAGUELIN, M; Nokes, DJ; MEDLEY, GF;
2021
Scientific reports, (2021).11 1 10.1038/s41598-021-81078-x.
The importance of local context in COVID-19 models.
EGGO, RM; Dawa, J; KUCHARSKI, AJ; Cucunuba, ZM;
2021
Nature Computational Science, (2021).1 1 10.1038/s43588-020-00014-7.
Clinical features and natural history of the first 2073 suspected COVID-19 cases in the Corona São Caetano primary care programme: a prospective cohort study.
Leal, FE; Mendes-Correa, MC; Buss, LF; Costa, SF; Bizario, JC S; De Souza, SR P; Thomaz, O; Tozetto-Mendoza, TR; Villas-Boas, LS; De Oliveira-da Silva, LC; Grespan, RM Z; Capuani, L; Buccheri, R; Domingues, H; ALEXANDER, N; MAYAUD, P; Sabino, EC;
2021
BMJ Open, (2021).11 1 10.1136/bmjopen-2020-042745.