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Publications

Engagement and adherence trade-offs for SARS-CoV-2 contact tracing.
Lucas, TC D; Davis, EL; Ayabina, D; Borlase, A; Crellen, T; Pi, L; MEDLEY, GF; Yardley, L; KLEPAC, P; Gog, J; Déirdre Hollingsworth, T;
2021
Philosophical transactions of the Royal Society of London. Series B, Biological sciences, (2021).376 1829 10.1098/rstb.2020.0270.
Exploring surveillance data biases when estimating the reproduction number: with insights into subpopulation transmission of COVID-19 in England.
SHERRATT, K; ABBOTT, S; MEAKIN, SR; HELLEWELL, J; MUNDAY, JD; BOSSE, N; CMMID COVID-19 Working Group,; JIT, M; FUNK, S;
2021
Philosophical transactions of the Royal Society of London. Series B, Biological sciences, (2021).376 1829 10.1098/rstb.2020.0283.
How immunity from and interaction with seasonal coronaviruses can shape SARS-CoV-2 epidemiology.
WATERLOW, N; VAN LEEUWEN, E; DAVIES, N; CMMID COVID-19 working group,; FLASCHE, S; EGGO, R;
2021
medRxiv (2021). 10.1101/2021.05.27.21257032.
Real-time monitoring of COVID-19 dynamics using automated trend fitting and anomaly detection.
JOMBART, T; Ghozzi, S; Schumacher, D; Taylor, TJ; LECLERC, QJ; JIT, M; FLASCHE, S; Greaves, F; Ward, T; EGGO, RM; NIGHTINGALE, E; MEAKIN, S; BRADY, OJ; Centre for Mathematical Modelling of Infectious Di,; MEDLEY, GF; Höhle, M; EDMUNDS, WJ;
2021
Philosophical transactions of the Royal Society of London. Series B, Biological sciences, (2021).376 1829 10.1098/rstb.2020.0266.
Effect of evidence updates on key determinants of measles vaccination impact: a DynaMICE modelling study in ten high-burden countries.
FU, H; Abbas, K; Klepac, P; VAN ZANDVOORT, K; Tanvir, H; Portnoy, A; JIT, M;
2021
medRxiv (2021). 10.1101/2021.05.28.21257964.
CoMix: Changes in social contacts as measured by the contact survey during the COVID-19 pandemic in England between March 2020 and March 2021.
Gimma, A; MUNDAY, J; WONG, KL M; Coletti, P; VAN ZANDVOORT, K; PREM, K; CMMID COVID-19 working group,; KLEPAC, P; Rubin, J; FUNK, S; Edmunds, J; JARVIS, C;
2021
medRxiv (2021). 10.1101/2021.05.28.21257973.
Spatial connectivity in mosquito-borne disease models: a systematic review of methods and assumptions.
LEE, SA; JARVIS, CI; EDMUNDS, WJ; Economou, T; LOWE, R;
2021
Journal of The Royal Society Interface, (2021).18 178 10.1098/rsif.2021.0096.
Exploring equity in health and poverty impacts of control measures for SARS-CoV-2 in six countries.
SWEENEY, S; Capeding, TP J; EGGO, R; Huda, M; JIT, M; Mudzengi, D; NAYLOR, NR; PROCTER, S; QUAIFE, M; Serebryakova, L; TORRES-RUEDA, S; Vargas, V; CHiL COVID Working Group,; VASSALL, A;
2021
BMJ global health, (2021).6 5 10.1136/bmjgh-2021-005521.
Genomic reconstruction of the SARS-CoV-2 epidemic in England.
Vöhringer, H; SANDERSON, T; Sinnott, M; Maio, ND; Nguyen, T; Goater, R; Schwach, F; Harrison, I; HELLEWELL, J; Ariani, C; Gonçalves, S; Jackson, D; Johnston, I; Jung, A; Saint, C; Sillitoe, J; Suciu, M; Goldman, N; Panovska-Griffiths, J; The Wellcome Sanger Institute Covid-19 Surveillanc,; The COVID-19 Genomics UK (COG-UK) Consortium,; Birney, E; Volz, E; FUNK, S; Kwiatkowski, D; ... Gerstung, M.
2021
medRxiv (2021). 10.1101/2021.05.22.21257633.
Estimating the contribution of HIV-infected adults to household pneumococcal transmission in South Africa, 2016-2018: A hidden Markov modelling study.
THINDWA, D; Wolter, N; Pinsent, A; Carrim, M; OJAL, J; Tempia, S; Moyes, J; McMorrow, M; Kleynhans, J; Von Gottberg, A; French, N; Cohen, C; FLASCHE, S;
2021
medRxiv (2021). 10.1101/2021.05.21.21257622.