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Publications

scoringutils: Utilities for Scoring and Assessing Predictions.
Bosse, N; Gruson, H; FUNK, S; ABBOTT, S;
2022
(2022).
Rates of serious clinical outcomes in survivors of hospitalisation with COVID-19 in England: a descriptive cohort study within the OpenSAFELY platform.
The OpenSAFELY Collaborative,; TAZARE, J; Walker, A; TOMLINSON, L; Hickman, G; RENTSCH, C; WILLIAMSON, E; BHASKARAN, K; Evans, D; WING, K; MATHUR, R; WONG, AY S; SCHULTZE, A; Bacon, S; Bates, C; Morton, C; Curtis, H; NIGHTINGALE, E; MCDONALD, H; Mehrkar, A; Inglesby, P; Davy, S; MacKenna, B; Cockburn, J; Hulme, W; ... GOLDACRE, B.
2022
Wellcome Open Res (2022). 10.12688/wellcomeopenres.17735.1.
Re-evaluating pathways through the spectrum of tuberculosis disease following M. tuberculosis infection.
Horton, K; RICHARDS, AS; Emery, JC; Esmail, H; HOUBEN, RM G J;
2022
(2022).
Quantifying incidence and pathways across TB disease states following Mtb infection.
Horton, K; Emery, JC; RICHARDS, AS; Esmail, H; HOUBEN, R;
2022
(2022).
Prevalence and Determinants of Vaginal Infection With Human Papillomavirus Among Female University Students in Vietnam.
VAN Trang, N; PREM, K; Toh, ZQ; Viet Ha, BT; Ngoc Lan, PT; Tran, HP; Pham, QD; VAN Khuu, N; JIT, M; Luu, DT; Khanh Ly, LE T; Cao, VA N; LE-Ha, T-D; Bright, K; Garland, SM; Anh, DD; Mulholland, K;
2021
In vivo (Athens, Greece), (2021).36 1 10.21873/invivo.12697.
Estimating the contribution of HIV-infected adults to household pneumococcal transmission in South Africa, 2016-2018: A hidden Markov modelling study.
THINDWA, D; Wolter, N; Pinsent, A; Carrim, M; Ojal, J; Tempia, S; Moyes, J; McMorrow, M; Kleynhans, J; Gottberg, AV; French, N; PHIRST group,; Cohen, C; FLASCHE, S;
2021
PLOS COMPUTATIONAL BIOLOGY, (2021).17 12 10.1371/journal.pcbi.1009680.
Real-time estimation of the time-varying transmission advantage of Omicron in England using S-Gene Target Status as a Proxy.
ABBOTT, S; Sherratt, K; FUNK, S;
2021
(2021).
A comprehensive high cost drugs dataset from the NHS in England - An OpenSAFELY-TPP Short Data Report.
Rowan, A; Bates, C; Hulme, W; Evans, D; Davy, S; A Kennedy, N; Galloway, J; E Mansfield, K; Bechman, K; MATTHEWMAN, J; Yates, M; Brown, J; SCHULTZE, A; Norton, S; J. Walker, A; E. Morton, C; BHASKARAN, K; T. Rentsch, C; WILLIAMSON, E; Croker, R; Bacon, S; Hickman, G; Ward, T; Green, A; Fisher, L; ... GOLDACRE, B.
2021
Wellcome Open Research, (2021).6, 10.12688/wellcomeopenres.17360.1.
Real-time estimation of the time-varying transmission advantage of Omicron in England using S-Gene Target Status as a Proxy.
ABBOTT, S; Sherratt, K; FUNK, S;
2021
, Zenodo (2021).
Bounding the levels of transmissibility & immune evasion of the Omicron variant in South Africa.
PEARSON, C; Silal, S; Li, MW Z; Dushoff, J; Bolker, B; ABBOTT, S; Van Schalkwyk, C; DAVIES, N; BARNARD, R; EDMUNDS, J; Bingham, J; Meyer-Rath, G; Jamieson, L; Glass, A; Wolter, N; Govender, N; Stevens, W; Stevens, W; Scott, L; Mlisana, K; Moultrie, H; Pulliam, J;
2021
medRxiv (2021). 10.1101/2021.12.19.21268038.