Publications

Practical considerations for measuring the effective reproductive number, R t.

Gostic, KM; McGough, L; Baskerville, EB; ABBOTT, S; Joshi, K; Tedijanto, C; Kahn, R; Niehus, R; Hay, J; De Salazar, PM; HELLEWELL, J; MEAKIN, S; MUNDAY, J; BOSSE, NI; Sherrat, K; THOMPSON, RN; White, LF; Huisman, JS; Scire, J; Bonhoeffer, S; Stadler, T; Wallinga, J; FUNK, S; Lipsitch, M; Cobey, S;

2020

medRxiv preprint (2020). 10.1101/2020.06.18.20134858.

Use of seasonal influenza and pneumococcal polysaccharide vaccines in older adults to reduce COVID-19 mortality.

THINDWA, D; Garcia Quesada, M; LIU, Y; Bennett, J; Cohen, C; Knoll, MD; Von Gottberg, A; Hayford, K; FLASCHE, S;

2020

VACCINE, (2020).38 34 10.1016/j.vaccine.2020.06.047.

Estimation of Seasonal Influenza Attack Rates and Antibody Dynamics in Children Using Cross-Sectional Serological Data.

Minter, A; Hoschler, K; JAGNE, YJ; Sallah, H; ARMITAGE, E; Lindsey, B; Hay, JA; Riley, S; DE SILVA, TI; KUCHARSKI, AJ;

2020

The Journal of infectious diseases, (2020).225 10 10.1093/infdis/jiaa338.

Spatial regression and spillover effects in cluster randomized trials with count outcomes.

Anaya-Izquierdo, K; ALEXANDER, N;

2020

BIOMETRICS, (2020).77 2 10.1111/biom.13316.

sbfnk/rbi.helpers.

FUNK, S; Finger, F;

2020

, Github (2020).

SOCRATES: an online tool leveraging a social contact data sharing initiative to assess mitigation strategies for COVID-19.

Willem, L; Van Hoang, T; FUNK, S; Coletti, P; Beutels, P; Hens, N;

2020

BMC research notes, (2020).13 1 10.1186/s13104-020-05136-9.

Effectiveness of isolation, testing, contact tracing, and physical distancing on reducing transmission of SARS-CoV-2 in different settings: a mathematical modelling study.

KUCHARSKI, AJ; KLEPAC, P; Conlan, AJ K; Kissler, SM; Tang, ML; Fry, H; Gog, JR; EDMUNDS, WJ; CMMID COVID-19 working group,;

2020

LANCET INFECTIOUS DISEASES, (2020).20 10 10.1016/S1473-3099(20)30457-6.

Global, regional, and national estimates of the population at increased risk of severe COVID-19 due to underlying health conditions in 2020: a modelling study.

CLARK, A; JIT, M; WARREN-GASH, C; Guthrie, B; Wang, HH X; Mercer, SW; SANDERSON, C; McKee, M; Troeger, C; Ong, KL; CHECCHI, F; PEREL, P; Joseph, S; GIBBS, HP; Banerjee, A; EGGO, RM; Centre for the Mathematical Modelling of Infectiou,;

2020

The Lancet. Global Health, (2020).8 8 10.1016/S2214-109X(20)30264-3.

Emergence of multidrug-resistant Mycobacterium tuberculosis of the Beijing lineage in Portugal and Guinea-Bissau: a snapshot of moving clones by whole-genome sequencing.

Perdigão, J; Silva, C; Maltez, F; Machado, D; Miranda, A; Couto, I; Rabna, P; Florez de Sessions, P; PHELAN, J; Pain, A; McNerney, R; HIBBERD, ML; Mokrousov, I; CLARK, TG; Viveiros, M; Portugal, I;

2020

EMERGING MICROBES & INFECTIONS, (2020).9 1 10.1080/22221751.2020.1774425.

An imperfect tool: contact tracing could provide valuable reductions in COVID-19 transmission if good adherence can be achieved and maintained.

Davis, EL; Lucas, TC D; Borlase, A; Pollington, TM; ABBOTT, S; Ayabina, D; Crellen, T; HELLEWELL, J; Pi, L; MEDLEY, GF; Hollingsworth, TD; KLEPAC, P;

2020

medRxiv preprint (2020). 10.1101/2020.06.09.20124008.