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Publications

Challenging the management of drug-resistant tuberculosis.
GASKELL, KM; MOORE, DA J;
2020
LANCET, (2020).395 10226 10.1016/S0140-6736(20)30052-0.
An observational report of universal GeneXpert testing of inpatients with diagnosed or presumptive TB in the Philippines.
Thi, AM; LEE, N; Parris, V; Marin, FP; Roy, L; Calapis, RW; Ariyoshi, K; Parry, CM; COX, SE;
2020
Transactions of the Royal Society of Tropical Medicine and Hygiene, (2020).114 9 10.1093/trstmh/traa044.
Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from South and Southeast Asia.
Wyres, KL; Nguyen, TN T; Lam, MM C; Judd, LM; Van Vinh Chau, N; DANCE, DA B; Ip, M; Karkey, A; Ling, CL; Miliya, T; Newton, PN; Lan, NP H; Sengduangphachanh, A; Turner, P; Veeraraghavan, B; Vinh, PV; Vongsouvath, M; Thomson, NR; Baker, S; HOLT, KE;
2020
Genome Medicine, (2020).12 1 10.1186/s13073-019-0706-y.
Quantifying the economic cost of antibiotic resistance and the impact of related interventions: rapid methodological review, conceptual framework and recommendations for future studies.
JIT, M; Ng, DH L; Luangasanatip, N; SANDMANN, F; ATKINS, KE; Robotham, JV; Pouwels, KB;
2020
BMC MEDICINE, (2020).18 1 10.1186/s12916-020-1507-2.
Feasibility of informing syndrome-level empiric antibiotic recommendations using publicly available antibiotic resistance datasets.
LECLERC, QJ; NAYLOR, NR; AIKEN, AM; COLL, F; KNIGHT, GM;
2020
Wellcome Open Research, (2020).4 140 10.12688/wellcomeopenres.15477.2.
A survey of Anopheles species composition and insecticide resistance on the island of Bubaque, Bijagos Archipelago, Guinea-Bissau.
Ant, T; Foley, E; TYTHERIDGE, S; Johnston, C; Goncalves, A; Ceesay, S; NDIATH, MO; Affara, M; Martinez, J; PRETORIUS, E; GRUNDY, C; Rodrigues, A; Djata, P; D'ALESSANDRO, U; BAILEY, R; MABEY, D; LAST, A; LOGAN, JG;
2020
Malaria journal, (2020).19 1 10.1186/s12936-020-3115-1.
Challenges with scale-up of GeneXpert MTB/RIF® in Uganda: a health systems perspective.
Nalugwa, T; Shete, PB; Nantale, M; Farr, K; Ojok, C; Ochom, E; Mugabe, F; Joloba, M; Dowdy, DW; MOORE, DA J; Davis, JL; Cattamanchi, A; Katamba, A;
2020
BMC HEALTH SERVICES RESEARCH, (2020).20 1 10.1186/s12913-020-4997-x.
Emergence of multidrug-resistant Mycobacterium tuberculosis of the Beijing lineage in Portugal and Guinea-Bissau: a snapshot of moving clones by whole-genome sequencing.
Perdigão, J; Silva, C; Maltez, F; Machado, D; Miranda, A; Couto, I; Rabna, P; Florez de Sessions, P; PHELAN, J; Pain, A; McNerney, R; HIBBERD, ML; Mokrousov, I; CLARK, TG; Viveiros, M; Portugal, I;
2020
EMERGING MICROBES & INFECTIONS, (2020).9 1 10.1080/22221751.2020.1774425.
Evolution of Mycobacterium tuberculosis complex lineages and their role in an emerging threat of multidrug resistant tuberculosis in Bamako, Mali.
Senghore, M; Diarra, B; Gehre, F; Otu, J; Worwui, A; Muhammad, AK; Kwambana-Adams, B; Kay, GL; Sanogo, M; Baya, B; Orsega, S; Doumbia, S; Diallo, S; De Jong, BC; Pallen, MJ; ANTONIO, M;
2020
Scientific reports, (2020).10 1 10.1038/s41598-019-56001-0.
GeneMates: an R package for Detecting Horizontal Gene Co-transfer between Bacteria Using Gene-gene Associations Controlled for Population Structure.
Wan, Y; Wick, RR; Zobel, J; Ingle, DJ; Inouye, M; HOLT, KE;
2020
bioRxiv preprint (2020). 10.1101/2020.02.29.970970.