Publications

Within-patient and global evolutionary dynamics of Klebsiella pneumoniae ST17.

Hetland, M; Hawkey, J; Bernhoff, E; Bakksjø, R-J; Kaspersen, H; Rettedal, SI; Sundsfjord, A; HOLT, K; Löhr, I;

2022

bioRxiv (2022). 10.1101/2022.11.01.514664.

Maternal colonization and early-onset neonatal bacterial sepsis in the Gambia, West Africa: a genomic analysis of vertical transmission.

OKOMO, UA; DARBOE, S; Bah, SY; Ayorinde, A; JARJU, S; SESAY, AK; Kebbeh, N; Gai, A; Dibbasey, T; GREY-JOHNSON, M; Le Doare, K; HOLT, KE; LAWN, JE; KAMPMANN, B;

2022

Clinical microbiology and infection, (2022).29 3 10.1016/j.cmi.2022.10.012.

Detection of Klebsiella pneumoniae human gut carriage: a comparison of culture, qPCR, and whole metagenomic sequencing methods.

Lindstedt, K; Buczek, D; Pedersen, T; Hjerde, E; Raffelsberger, N; Suzuki, Y; Brisse, S; HOLT, K; Samuelsen, Ø; Sundsfjord, A;

2022

Gut Microbes, (2022).14 1 10.1080/19490976.2022.2118500.

Detection and typing of plasmids in Acinetobacter baumannii using rep genes encoding replication initiation proteins.

Lam, MM C; Koong, J; HOLT, K; Hall, R; Hamidian, M;

2022

bioRxiv (2022). 10.1101/2022.08.26.505409.

Epidemiology and genomic analysis of Klebsiella oxytoca from a single hospital network in Australia.

Stewart, J; Judd, LM; Jenney, A; HOLT, KE; Wyres, KL; Hawkey, J;

2022

BMC Infectious Diseases, (2022).22 1 10.1186/s12879-022-07687-7.

ESBL plasmids in Klebsiella pneumoniae: diversity, transmission and contribution to infection burden in the hospital setting.

Hawkey, J; Wyres, KL; Judd, LM; Harshegyi, T; Blakeway, L; Wick, RR; Jenney, AW J; HOLT, KE;

2022

Genome medicine, (2022).14 1 10.1186/s13073-022-01103-0.

The prevalence of molecular markers of resistance to sulfadoxine-pyrimethamine among pregnant women at first antenatal clinic attendance and delivery in the forest-savannah area of Ghana.

DOSOO, DK; Bailey, JA; ASANTE, KP; Oppong, FB; Niaré, K; Opoku-Mensah, J; OWUSU-AGYEI, S; GREENWOOD, B; CHANDRAMOHAN, D;

2022

PloS One, (2022).17 8 10.1371/journal.pone.0271489.

Perceptions and reported practices of pregnant women and mothers of children under two years of age regarding antibiotic use and resistance in Vientiane province, Lao PDR: a qualitative study.

Sychareun, V; Phounsavath, P; Sihavong, A; Kounnavong, S; Chaleunvong, K; Machowska, A; Keohavong, B; Mayxay, M; Eriksen, J; HANSON, C; Vongsouvath, M; Brauner, A; Durham, J; Stålsby Lundborg, C;

2022

BMC Pregnancy and Childbirth, (2022).22 1 10.1186/s12884-022-04894-7.

Antimicrobial resistance patterns in bacteria causing febrile illness in Africa, South Asia, and Southeast Asia: a systematic review of published etiological studies from 1980-2015.

Roberts, T; Dahal, P; Shrestha, P; Schilling, W; Shrestha, R; Ngu, R; Huong, VT L; Van Doorn, HR; Phimolsarnnousith, V; Miliya, T; Crump, JA; Bell, D; Newton, PN; Dittrich, S; HOPKINS, H; Stepniewska, K; Guerin, PJ; Ashley, EA; Turner, P;

2022

International journal of infectious diseases, (2022).122, 10.1016/j.ijid.2022.07.018.

Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae.

FOSTER-NYARKO, E; Cottingham, H; Wick, R; Judd, L; Lam, M; Wyres, K; Stanton, T; TSANG, K; David, S; Aanensen, D; Brisse, S; HOLT, K;

2022

bioRxiv (2022). 10.1101/2022.06.30.498322.