Publications

Decentralising DR-TB care: the trade-off between quality of care and service coverage in the early phase of implementation.

Jassat, W; Moshabela, M; Nicol, MP; Dickson, L; Cox, H; Mlisana, K; Black, J; Loveday, M; GRANT, AD; Kielmann, K; Schneider, H;

2025

Public health action, (2025).15 3 10.5588/pha.25.0004.

ResMAP-a saturation mutagenesis platform enabling parallel profiling of target-specific resistance-conferring mutations in Plasmodium.

WALL, RJ; MacGowan, SA; Hallyburton, I; Syed, AJ; Ajay Castro, S; Dey, G; Milne, R; Patterson, S; PHELAN, J; Wiedemar, N; Wyllie, S;

2024

mBio, (2024).15 10 10.1128/mbio.01708-24.

WHO global research priorities for antimicrobial resistance in human health.

Bertagnolio, S; Dobreva, Z; Centner, CM; Olaru, ID; Donà, D; Burzo, S; Huttner, BD; Chaillon, A; Gebreselassie, N; Wi, T; Hasso-Agopsowicz, M; Allegranzi, B; Sati, H; Ivanovska, V; Kothari, KU; Balkhy, HH; Cassini, A; Hamers, RL; Weezenbeek, KV; WHO Research Agenda for AMR in Human Health Collab,;

2024

The Lancet Microbe, (2024).5 11 10.1016/S2666-5247(24)00134-4.

Quantitative drug susceptibility testing for Mycobacterium tuberculosis using unassembled sequencing data and machine learning.

CRyPTIC consortium,;

2024

PLoS computational biology, (2024).20 8 10.1371/journal.pcbi.1012260.

In vivo selection of carbapenem resistance during persistent Klebsiella pneumoniae sequence type 395 bloodstream infection due to OmpK36 deletion.

Strahilevitz, J; Motro, Y; Temper, V; Merezhko, D; Ayalon, O; Bar Moshe, Y; Lam, MM C; HOLT, KE; Moran-Gilad, J;

2024

Antimicrobial agents and chemotherapy, (2024).68 8 10.1128/aac.00663-24.

Pathogen diversity and antimicrobial resistance transmission of Salmonella enterica serovars Typhi and Paratyphi A in Bangladesh, Nepal, and Malawi: a genomic epidemiological study.

DYSON, ZA; Ashton, PM; Khanam, F; Chunga Chirambo, A; Shakya, M; Meiring, JE; Tonks, S; Karkey, A; Msefula, C; Clemens, JD; Dunstan, SJ; Baker, S; Dougan, G; Pitzer, VE; Basnyat, B; Qadri, F; Heyderman, RS; Gordon, MA; Pollard, AJ; HOLT, KE; STRATAA Study Group,;

2024

The Lancet microbe, (2024).5 8 10.1016/S2666-5247(24)00047-8.

An open-access database to navigate Mycobacterium tuberculosis genetic diversity.

Wall, R; PHELAN, J;

2024

(2024).

The TyphiNET data visualisation dashboard: Unlocking Salmonella Typhi genomics data to support public health.

DYSON, Z; CERDEIRA, L; Sharma, V; CAREY, M; HOLT, K; Global Typhoid Genomics Consortium,;

2024

bioRxiv (2024). 10.1101/2024.06.03.595798.

Genomic diversity and antimicrobial resistance in clinical Klebsiella pneumoniae isolates from tertiary hospitals in Southern Ghana.

Mills, RO; Dadzie, I; Le-Viet, T; Baker, DJ; Addy, HP K; Akwetey, SA; Donkoh, IE; Quansah, E; Semanshia, PS; Morgan, J; Mensah, A; Adade, NE; Ampah, EO; Owusu, E; Mwintige, P; Amoako, EO; SPADAR, A; HOLT, KE; FOSTER-NYARKO, E;

2024

The Journal of antimicrobial chemotherapy, (2024).79 7 10.1093/jac/dkae123.

Diversity, functional classification and genotyping of SHV β-lactamases in Klebsiella pneumoniae.

Tsang, K; Lam, MM C; Wick, R; Wyres, K; Bachman, M; Baker, S; Barry, K; Brisse, S; CAMPINO, S; Chiaverini, A; Cirillo, DM; CLARK, T; Corander, J; Corbella, M; Cornacchia, A; Cuénod, A; D'Alterio, N; Di Marco, F; Donado-Godoy, P; Egli, A; Farzana, R; Feil, E; Fostervold, A; Gorrie, C; Gütlin, Y; ... KlebNET AMR Genotype-Phenotype Group,

2024

bioRxiv (2024). 10.1101/2024.04.05.587953.