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Publications

Markers of epidemiological success of methicillin-resistant Staphylococcus aureus isolates in European populations.
Baede, VO; Gupta, A; KNIGHT, GM; Schouls, LM; Laing, K; Tavakol, M; Barray, A; De Vlas, SJ; De Vos, AS; Hendrickx, AP A; Khan, M; Kretzschmar, ME; Van Wamel, WJ B; Lina, G; Vandenesch, F; Vos, MC; Witney, AA; Rasigade, J-P; Lindsay, JA;
2023
Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases, (2023).29 9 10.1016/j.cmi.2023.05.015.
A point mutation in recC associated with subclonal replacement of carbapenem-resistant Klebsiella pneumoniae ST11 in China.
Zhou, K; Xue, C-X; Xu, T; Shen, P; Wei, S; Wyres, KL; Lam, MM C; Liu, J; Lin, H; Chen, Y; HOLT, KE; BRICS Working Group,; Xiao, Y;
2023
Nature communications, (2023).14 1 10.1038/s41467-023-38061-z.
Genomic epidemiology and antimicrobial resistance transmission of<i>Salmonella</i>Typhi and Paratyphi A at three urban sites in Africa and Asia.
DYSON, Z; Ashton, P; Khanam, F; Chunga, A; Shakya, M; Meiring, J; Tonks, S; Karkey, A; Msefula, C; Clemens, J; Dunstan, S; Baker, S; Dougan, G; Pitzer, V; Basnyat, B; Qadri, F; Heyderman, R; Gordon, M; Pollard, A; HOLT, K; STRATAA Study Group,;
2023
medRxiv (2023). 10.1101/2023.03.11.23286741.
Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae.
FOSTER-NYARKO, E; HOLT, KE; Cottingham, H; Wick, R; Judd, LM; Lam, M; Wyres, KL; Stanton, T; Tsang, KK; David, S; Bridel, S; Palma, F; Aanensen, DM; Brisse, S;
2023
, Figshare (2023).
Comment on: MDR carbapenemase-producing Klebsiella pneumoniae of the hypervirulence-associated ST23 clone in Poland, 2009-19.
Lam, MM C; HOLT, KE; Wyres, KL;
2023
The Journal of antimicrobial chemotherapy, (2023).78 4 10.1093/jac/dkad028.
Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae.
FOSTER-NYARKO, E; Cottingham, H; Wick, RR; Judd, LM; Lam, MM C; Wyres, KL; STANTON, TD; TSANG, KK; David, S; Aanensen, DM; Brisse, S; HOLT, KE;
2023
Microbial genomics, (2023).9 2 10.1099/mgen.0.000936.
Newly available genomic data highlights the need for urgent action to stop the emergence and spread of drug-resistant typhoid.
CAREY, ME; DYSON, Z; Ingle, DJ; HOLT, KE;
2023
(2023).
Global diversity and antimicrobial resistance of typhoid fever pathogens: insights from 13,000<i>Salmonella</i>Typhi genomes.
CAREY, M; DYSON, Z; Ingle, D; Amir, A; Aworh, M; Chattaway, MA; Chew, KL; Crump, J; Feasey, N; Howden, B; Keddy, K; Maes, M; Parry, C; Puyvelde, SV; Webb, H; Afolayan, A; Anandan, S; Andrews, J; Ashton, P; Basnyat, B; Bavdekar, A; Bogoch, I; Clemens, J; Da Silva, K; De, A; ... Global Typhoid Genomics Consortium Group Authorshi,
2022
medRxiv (2022). 10.1101/2022.12.28.22283969.
Detection and Typing of Plasmids in Acinetobacter baumannii Using rep Genes Encoding Replication Initiation Proteins.
Lam, MM C; Koong, J; HOLT, KE; Hall, RM; Hamidian, M;
2022
Microbiology spectrum, (2022).11 1 10.1128/spectrum.02478-22.
A Shigella sonnei clone with extensive drug resistance associated with waterborne outbreaks in China.
Qiu, S; Liu, K; Yang, C; Xiang, Y; Min, K; Zhu, K; Liu, H; Du, X; Yang, M; Wang, L; Sun, Y; Zhou, H; Mahe, M; Zhao, J; Li, S; Yu, D; Hawkey, J; HOLT, KE; Baker, S; Yang, J; Xu, X; Song, H;
2022
Nature communications, (2022).13 1 10.1038/s41467-022-35136-1.