Publications

Human pharyngeal microbiota in age-related macular degeneration.

Ho, EX P; Cheung, CM G; Sim, S; Chu, CW; Wilm, A; Lin, CB; Mathur, R; Wong, D; Chan, CM; Bhagarva, M; Laude, A; Lim, TH; Wong, TY; Cheng, CY; Davila, S; HIBBERD, M;

2018

PloS one, (2018).13 8 10.1371/journal.pone.0201768.

Evidence for Host-Bacterial Co-evolution via Genome Sequence Analysis of 480 Thai Mycobacterium tuberculosis Lineage 1 Isolates.

Palittapongarnpim, P; Ajawatanawong, P; Viratyosin, W; Smittipat, N; Disratthakit, A; Mahasirimongkol, S; Yanai, H; Yamada, N; Nedsuwan, S; Imasanguan, W; Kantipong, P; Chaiyasirinroje, B; Wongyai, J; Toyo-Oka, L; PHELAN, J; Parkhill, J; CLARK, TG; HIBBERD, ML; Ruengchai, W; Palittapongarnpim, P; Juthayothin, T; Tongsima, S; Tokunaga, K;

2018

Scientific reports, (2018).8 1 10.1038/s41598-018-29986-3.

Structure mapping of dengue and Zika viruses reveals new functional long-range interactions.

Huber, R; Lim, XN; Ng, WC; Sim, A; Poh, HX; Shen, Y; Lim, SY; Sundstrom, AK B; Sun, X; Aw, JG; Too, HK; Boey, PH; Wilm, A; Chawla, T; Choy, MJ; Jiang, L; De Sessions, PF; Loh, XJ; Alonso, S; HIBBERD, M; Nagarajan, N; Ooi, EE; Bond, P; Sessions, O; Wan, Y;

2018

bioRxiv (2018). 10.1101/381368.

Human candidate gene polymorphisms and risk of severe malaria in children in Kilifi, Kenya: a case-control association study.

Ndila, CM; Uyoga, S; Macharia, AW; Nyutu, G; Peshu, N; OJAL, J; Shebe, M; Awuondo, KO; Mturi, N; Tsofa, B; Sepúlveda, N; CLARK, TG; Band, G; Clarke, G; Rowlands, K; Hubbart, C; Jeffreys, A; Kariuki, S; Marsh, K; Mackinnon, M; Maitland, K; Kwiatkowski, DP; Rockett, KA; Williams, TN; MalariaGEN Consortium,;

2018

The Lancet Haematology, (2018).5 8 10.1016/S2352-3026(18)30107-8.

Genomic analysis of a pre-elimination Malaysian Plasmodium vivax population reveals selective pressures and changing transmission dynamics.

Auburn, S; Benavente, ED; Miotto, O; Pearson, RD; Amato, R; Grigg, MJ; Barber, BE; William, T; Handayuni, I; Marfurt, J; Trimarsanto, H; Noviyanti, R; Sriprawat, K; Nosten, F; CAMPINO, S; CLARK, TG; Anstey, NM; Kwiatkowski, DP; Price, RN;

2018

Nature communications, (2018).9 1 10.1038/s41467-018-04965-4.

Long read assemblies of geographically dispersed Plasmodium falciparum isolates reveal highly structured subtelomeres.

Otto, TD; Böhme, U; Sanders, M; Reid, A; Bruske, EI; Duffy, CW; Bull, PC; Pearson, RD; Abdi, A; Dimonte, S; STEWART, LB; CAMPINO, S; Kekre, M; Hamilton, WL; Claessens, A; Volkman, SK; Ndiaye, D; AMAMBUA-NGWA, A; Diakite, M; Fairhurst, RM; CONWAY, DJ; Franck, M; Newbold, CI; Berriman, M;

2018

Wellcome open research, (2018).3, 10.12688/wellcomeopenres.14571.1.

Global analysis of Plasmodium falciparum histidine-rich protein-2 (pfhrp2) and pfhrp3 gene deletions using whole-genome sequencing data and meta-analysis.

Sepúlveda, N; PHELAN, J; Diez-Benavente, E; CAMPINO, S; CLARK, TG; HOPKINS, H; SUTHERLAND, C; DRAKELEY, CJ; BESHIR, KB;

2018

Infection, genetics and evolution, (2018).62, 10.1016/j.meegid.2018.04.039.

Use of whole genome sequencing in surveillance of drug resistant tuberculosis.

McNerney, R; Zignol, M; CLARK, TG;

2018

Expert review of anti-infective therapy, (2018).16 5 10.1080/14787210.2018.1472577.

Clonal expansion across the seas as seen through CPLP-TB database: A joint effort in cataloguing Mycobacterium tuberculosis genetic diversity in Portuguese-speaking countries.

Perdigão, J; Silva, C; Diniz, J; Pereira, C; Machado, D; Ramos, J; Silva, H; Abilleira, F; Brum, C; Reis, AJ; Macedo, M; Scaini, JL; Silva, AB; Esteves, L; Macedo, R; Maltez, F; Clemente, S; Coelho, E; Viegas, S; Rabna, P; Rodrigues, A; Taveira, N; Jordao, L; Kritski, A; Lapa E Silva, JR; ... Portugal, I.

2018

Infection, genetics and evolution, (2018).72, 10.1016/j.meegid.2018.03.011.

Human Coronavirus NL63 Molecular Epidemiology and Evolutionary Patterns in Rural Coastal Kenya.

Kiyuka, PK; Agoti, CN; Munywoki, PK; Njeru, R; Bett, A; Otieno, JR; Otieno, GP; Kamau, E; CLARK, TG; Van der Hoek, L; Kellam, P; Nokes, DJ; COTTEN, M;

2018

The Journal of infectious diseases, (2018).217 11 10.1093/infdis/jiy098.