Publications

Genome assemblies and pan-genome data for 328 clinical isolates of Klebsiella pneumoniae species complex, representing one year of infections diagnosed in a hospital diagnostic lab.

HOLT, KE; Gorrie, C; Wyres, K;

2021

, Monash University (2021).

Rapid Viral Testing and Antibiotic Prescription in Febrile Children With Respiratory Symptoms Visiting Emergency Departments in Europe.

Tan, CD; Hagedoorn, NN; DEWEZ, JE; Borensztajn, DM; Von Both, U; Carrol, ED; Emonts, M; Van der Flier, M; De Groot, R; Herberg, J; Kohlmaier, B; Levin, M; Lim, E; Maconochie, IK; Martinon-Torres, F; Nijman, RG; Pokorn, M; Rivero-Calle, I; Strle, F; Tsolia, M; Vermont, CL; YEUNG, S; Zachariasse, JM; Zenz, W; Zavadska, D; ... PERFORM Consortium,

2021

The Pediatric infectious disease journal, (2021).41 1 10.1097/inf.0000000000003326.

Rapid Genomic Characterization and Global Surveillance of Klebsiella Using Pathogenwatch.

Argimón, S; David, S; Underwood, A; Abrudan, M; Wheeler, NE; Kekre, M; Abudahab, K; Yeats, CA; Goater, R; Taylor, B; Harste, H; Muddyman, D; Feil, EJ; Brisse, S; HOLT, K; Donado-Godoy, P; Ravikumar, KL; Okeke, IN; Carlos, C; Aanensen, DM; NIHR Global Health Research Unit on Genomic Survei,;

2021

Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, (2021).73 Suppl_ 10.1093/cid/ciab784.

Antibiotic stories: a mixed-methods, multi-country analysis of household antibiotic use in Malawi, Uganda and Zimbabwe.

DIXON, J; MacPherson, EE; NAYIGA, S; MANYAU, S; Nabirye, C; Kayendeke, M; Sanudi, E; Nkaombe, A; Mareke, P; Sitole, K; DE LIMA HUTCHISON, C; BRADLEY, J; YEUNG, S; FERRAND, RA; LAL, S; ROBERTS, C; Green, E; Denyer Willis, L; STAEDKE, SG; CHANDLER, CI R;

2021

BMJ Global Health, (2021).6 11 10.1136/bmjgh-2021-006920.

Burden of enteric fever at three urban sites in Africa and Asia: a multicentre population-based study.

Meiring, JE; Shakya, M; Khanam, F; Voysey, M; Phillips, MT; Tonks, S; THINDWA, D; Darton, TC; Dongol, S; Karkey, A; Zaman, K; Baker, S; Dolecek, C; Dunstan, SJ; Dougan, G; HOLT, KE; Heyderman, RS; Qadri, F; Pitzer, VE; Basnyat, B; Gordon, MA; Clemens, J; Pollard, AJ; STRATAA Study Group,;

2021

The Lancet. Global health, (2021).9 12 10.1016/S2214-109X(21)00370-3.

Regional differences in carbapenem-resistant Klebsiella pneumoniae.

Wyres, K; HOLT, K;

2021

The Lancet. Infectious diseases, (2021).22 3 10.1016/s1473-3099(21)00425-4.

Community pharmacies, drug stores, and antibiotic dispensing in Indonesia: a qualitative study.

Ferdiana, A; LIVERANI, M; KHAN, M; Wulandari, LP L; Mashuri, YA; Batura, N; Wibawa, T; YEUNG, S; Day, R; Jan, S; WISEMAN, V; Probandari, A;

2021

BMC public health, (2021).21 1 10.1186/s12889-021-11885-4.

Multiple introductions of multidrug-resistant typhoid associated with acute infection and asymptomatic carriage, Kenya.

Kariuki, S; DYSON, ZA; Mbae, C; Ngetich, R; Kavai, SM; Wairimu, C; Anyona, S; Gitau, N; Onsare, RS; Ongandi, B; Duchene, S; Ali, M; Clemens, JD; HOLT, KE; Dougan, G;

2021

eLife, (2021).10, 10.7554/eLife.67852.

The contribution of hospital-acquired infections to the COVID-19 epidemic in England in the first half of 2020.

Knight, GM; Pham, TM; Stimson, J; FUNK, S; Jafari, Y; Pople, D; Evans, S; Yin, M; Brown, CS; Bhattacharya, A; Hope, R; Semple, MG; ISARIC4C Investigators,; CMMID COVID-19 Working Group,; Read, JM; Cooper, BS; Robotham, JV;

2021

BMC Infectious Diseases, (2021).22 1 10.1186/s12879-022-07490-4.

Genomic Diversity and Antimicrobial Resistance of Haemophilus Colonizing the Airways of Young Children with Cystic Fibrosis.

Watts, SC; Judd, LM; Carzino, R; Ranganathan, S; HOLT, KE;

2021

mSystems, (2021).6 4 10.1128/mSystems.00178-21.