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Publications

Data scientist analysing information

Browse a collection of academic publications and research papers, contributed to by personnel from the Unit.

Correction: Oluwagbemi et al. Bioinformatics, Computational Informatics, and Modeling Approaches to the Design of mRNA COVID-19 Vaccine Candidates. Computation 2022, 10, 117.
Oluwagbemi, OO; Oladipo, EK; Kolawole, OM; Oloke, JK; Adelusi, TI; Irewolede, BA; Dairo, EO; Ayeni, AE; Kolapo, KT; Akindiya, OE; Oluwasegun, JA; Oluwadara, BF; FATUMO, S;
2022
Computation, (2022).10 12 10.3390/computation10120211.
Assessment of a diverse panel of transmitted/founder HIV-1 infectious molecular clones in a luciferase based CD8 T-cell mediated viral inhibition assay.
Fernandez, N; Hayes, P; Makinde, J; Hare, J; King, D; Xu, R; Rehawi, O; Mezzell, AT; Kato, L; Mugaba, S; SERWANGA, J; Chemweno, J; Nduati, E; Price, MA; Osier, F; Ochsenbauer, C; Yue, L; Hunter, E; Gilmour, J; IAVI protocol C investigators,;
2022
Frontiers in immunology, (2022).13, 10.3389/fimmu.2022.1029029.
High-resolution African HLA resource uncoversHLA-DRB1expression effects underlying vaccine response.
Mentzer, A; Dilthey, A; Pollard, M; Gurdasani, D; Karakoc, E; Carstensen, T; Muhwezi, A; Cutland, C; Diarra, A; Antunes, RD S; Paul, S; Smits, G; Wareing, S; Kim, H; Pomilla, C; Chong, A; Brandt, DY C; Nielsen, R; Neaves, S; Timpson, N; Crinklaw, A; Lindestam Arlehamn, C; Rautanen, A; Kizito, D; Parks, T; ... Sandhu, M.
2022
medRxiv (2022). 10.1101/2022.11.24.22282715.
QuasiFlow: a Nextflow pipeline for analysis of NGS-based HIV-1 drug resistance data.
Ssekagiri, A; Jjingo, D; Lujumba, I; BBOSA, N; Bugembe, DL; Kateete, DP; Jordan, IK; KALEEBU, P; SSEMWANGA, D;
2022
Bioinformatics advances, (2022).2 1 10.1093/bioadv/vbac089.
Is hope associated with HIV-acquisition risk and intimate partner violence amongst young women and men? A cross-sectional study in urban informal settlements in South Africa.
Gibbs, A; Desmond, C; Barnett, T; Shahmanesh, M; SEELEY, J;
2022
AIDS Care, (2022).35 6 10.1080/09540121.2022.2143470.
Mental health challenges and perceived risks among female sex Workers in Nairobi, Kenya.
PANNEH, M; GAFOS, M; Nyariki, E; Liku, J; SHAH, P; Wanjiru, R; Wanjiru, M; Beksinska, A; Pollock, J; Maisha Fiti Study Champions,; Jama, Z; Babu, H; Kaul, R; SEELEY, J; BRADLEY, J; Kimani, J; BEATTIE, T;
2022
BMC public health, (2022).22 1 10.1186/s12889-022-14527-5.
High-resolution African HLA resource uncovers HLA-DRB1 expression effects underlying vaccine response: summary statistics.
Mentzer, A; Dilthey, A; Pollard, M; Gurdasani, D; Karakoc, E; Carstensen, T; Muhwezi, A; Cutland, C; Diarra, A; Da Silva Antunes, R; Paul, S; Smits, G; Wareing, S; Kim, H; Pomilla, C; Chong, A; Brandt, D; Nielsen, R; Neaves, S; Timpson, N; Crinklaw, A; Arlehamn, C; Rautanen, A; Kizito, D; Parks, T; ... Sandhu, M.
2022
, Zenodo (2022).
Contribution of PEPFAR-Supported HIV and TB Molecular Diagnostic Networks to COVID-19 Testing Preparedness in 16 Countries.
Romano, ER; Sleeman, K; Hall-Eidson, P; Zeh, C; Bhairavabhotla, R; Zhang, G; Adhikari, A; Alemnji, G; Cardo, YR; Pinheiro, A; Pocongo, B; Eno, LT; Shang, JD; Ndongmo, CB; Rosario, H; Moreno, O; De León, LA D L C; Fonjungo, P; Kabwe, C; Ahuke-Mundeke, S; Gama, D; Dlamini, S; Maphalala, G; Abreha, T; Purfield, A; ... Alexander, H.
2022
Emerging infectious diseases, (2022).28 13 10.3201/eid2813.220789.
Anopheles gambiae Trehalase Inhibitors for Malaria Vector Control: A Molecular Docking and Molecular Dynamics Study.
Adedeji, EO; Oduselu, GO; Ogunlana, OO; FATUMO, S; Koenig, R; Adebiyi, E;
2022
Insects, (2022).13 11 10.3390/insects13111070.
Short-term oral pre-exposure prophylaxis against HIV-1 modulates the transcriptome of foreskin tissue in young men in Africa.
Petkov, S; Herrera, C; Else, L; Lebina, L; Opoka, D; Seiphetlo, TB; Pillay, A-DA; Mugaba, S; Namubiru, P; Odoch, G; SSEMATA, AS; SERWANGA, J; KALEEBU, P; WEBB, EL; Khoo, S; Martinson, N; Gray, CM; Fox, J; Chiodi, F;
2022
Frontiers in immunology, (2022).13, 10.3389/fimmu.2022.1009978.