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Mr Joseph Thorpe

Research Fellow in Bioinformatics

United Kingdom

Affiliations

Department of Infection Biology
Faculty of Infectious and Tropical Diseases

Selected Publications

Rapid whole genome sequencing of Plasmodium DNA from cryptic malaria cases in UK travellers provides insights into infection origins, transmission, and antimalarial resistance.
Tan, MK I; BILLOWS, N; Nolder, D; MOSS, S; Phelan, JE; THORPE, J; Edgeworth, JL; SUTHERLAND, CJ; Chiodini, PL; CAMPINO, S; CLARK, TG;
2026
Journal of travel medicine
Malaria-MOI: A flexible and scalable tool for predicting multiplicity of infection in malaria parasites.
BILLOWS, N; PHELAN, J; THORPE, J; VANHEER, LN; Tan, MK; CAMPINO, S; CLARK, TG;
2026
Genome medicine
Malaria-GENOMAP: a web-based tool for exploring genomic variation of malaria parasites.
THORPE, J; BILLOWS, N; Ngwana-Joseph, GC; Ibrahim, A; NOLDER, D; SUTHERLAND, CJ; Nguyen, TH N; Nguyen, TH B; Nguyen, QT; Dombrowski, JG; Di Santi, SM; Marinho, CR F; PHELAN, JE; Kurowski, T; Mohareb, F; CAMPINO, S; CLARK, TG;
2026
Bioinformatics (Oxford, England)
Enhancing whole genome DNA amplification of Plasmodium falciparum for advanced molecular surveillance in malaria control.
Tan, MK I; De Jesus, MC S; PHELAN, JE; THORPE, J; Ward, D; Batra, R; Patel, A; NOLDER, D; Chiodini, P; SUTHERLAND, CJ; Edgeworth, J; CLARK, TG; CAMPINO, S;
2025
Malaria journal
TOAST: a novel tool for designing targeted gene amplicons and an optimised set of primers for high-throughput sequencing in tuberculosis genomic studies.
Wang, L; Thawong, N; THORPE, J; Higgins, C; Ik, MT K; Sawaengdee, W; Mahasirimongkol, S; Perdigão, J; CAMPINO, S; CLARK, TG; PHELAN, JE;
2025
BMC genomics
PPE50 variants as novel phylogeographic signatures of host-pathogen co-evolution in tuberculosis.
D'Souza, C; PHELAN, JE; Gomez-Gonzalez, P-J; THORPE, J; CLARK, TG; Tsolaki, AG;
2025
Communications biology
High quality reference genomes for UK tick species
Higgins, M; BILLOWS, N; De Jesus, M; COLLINS, E; THORPE, J; Phelan, J; KRISTAN, M; CLARK, TG; Campino, S; White, ML; Nettlemill, A; Hartman, H; Wise, EL; Pullan, ST; Hansford, KM; Brown, FV; Collins, H; Medlock, JM;
2024
Vector-borne diseases in the UK: Biennial conference 2024, Liverpool
Multi-platform whole genome sequencing for tuberculosis clinical and surveillance applications.
THORPE, J; Sawaengdee, W; Ward, D; Campos, M; Wichukchinda, N; Chaiyasirinroje, B; Thanraka, A; Chumpol, J; PHELAN, JE; CAMPINO, S; Mahasirimongkol, S; CLARK, TG;
2024
Scientific reports
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