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Publications

AHHME: A model for estimating the holistic cost-effectiveness of antimicrobial resistance interventions in food animal production.
Emes, ET; WAAGE, J; KNIGHT, GM; NAYLOR, NR;
2023
One health, (2023).17, 10.1016/j.onehlt.2023.100629.
aj-clements/Vivli-AMR-KG.
KNIGHT, GM; Waterlow, N; Wildfire, J; Clements, AJ;
2023
, Github (2023).
Quantifying patient- and hospital-level antimicrobial resistance dynamics in Staphylococcus aureus from routinely collected data.
Leclerc, Q; CLEMENTS, A; Dunn, H; Hatcher, J; Lindsay, JA; Grandjean, L; KNIGHT, GM;
2023
Journal of medical microbiology, (2023).72 7 10.1099/jmm.0.001724.
Markers of epidemiological success of methicillin-resistant Staphylococcus aureus isolates in European populations.
Baede, VO; Gupta, A; KNIGHT, GM; Schouls, LM; Laing, K; Tavakol, M; Barray, A; De Vlas, SJ; De Vos, AS; Hendrickx, AP A; Khan, M; Kretzschmar, ME; Van Wamel, WJ B; Lina, G; Vandenesch, F; Vos, MC; Witney, AA; Rasigade, J-P; Lindsay, JA;
2023
Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases, (2023).29 9 10.1016/j.cmi.2023.05.015.
Quantifying patient- and hospital-level antimicrobial resistance dynamics in Staphylococcus aureus from routinely collected data.
Leclerc, Q; Clements, A; Dunn, H; Hatcher, J; Lindsay, JA; Grandjean, L; Knight, GM;
2023
medRxiv (2023). 10.1101/2023.02.15.23285946.
Polypolish: Short-read polishing of long-read bacterial genome assemblies.
Wick, RR; HOLT, KE;
2022
PLoS computational biology, (2022).18 1 10.1371/journal.pcbi.1009802.
Molecular characterization of drug-resistant Mycobacterium tuberculosis among Filipino patients derived from the national tuberculosis prevalence survey Philippines 2016.
Montoya, JC; Malabad, JC M; Ang, CF; Reyes, LT; Basilio, RP; Lim, DR; Amarillo, ML E; Ama, MC G; PHELAN, JE; HIBBERD, ML; CLARK, TG;
2022
Tuberculosis, (2022).135, 10.1016/j.tube.2022.102211.
Species interactions constrain adaptation and preserve ecological stability in an experimental microbial community.
Barber, JN; Nicholson, LC; Woods, LC; Judd, LM; Sezmis, AL; Hawkey, J; HOLT, KE; McDonald, MJ;
2022
The ISME Journal: Multidisciplinary Journal of Microbial Ecology, (2022).16 5 10.1038/s41396-022-01191-1.
Characterisation of drug-resistant Mycobacterium tuberculosis mutations and transmission in Pakistan.
Napier, G; Khan, AS; Jabbar, A; Khan, MT; Ali, S; Qasim, M; Mohammad, N; Hasan, R; Hasan, Z; CAMPINO, S; Ahmad, S; Khattak, B; Waddell, SJ; Khan, TA; PHELAN, JE; CLARK, TG;
2022
Scientific reports, (2022).12 1 10.1038/s41598-022-11795-4.
Correction to: Diversity and evolution of surface polysaccharide synthesis loci in Enterobacteriales.
HOLT, KE; Lassalle, F; Wyres, KL; Wick, R; Mostowy, RJ;
2022
ISME JOURNAL, (2022).16 5 10.1038/s41396-021-01181-9.