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Prof Simon Frost

Professor of Pathogen Dynamics

United Kingdom

Affiliations

Department of Infectious Disease Epidemiology and Dynamics
Faculty of Epidemiology and Population Health

Selected Publications

Use of Next-Generation Sequencing in a State-Wide Strategy of HIV-1 Surveillance: Impact of the SARS-COV-2 Pandemic on HIV-1 Diagnosis and Transmission.
Zhou, S; Long, N; Moeser, M; Hill, CS; Samoff, E; Mobley, V; FROST, S; Bayer, C; Kelly, E; Greifinger, A; Shone, S; Glover, W; Clark, M; Eron, J; Cohen, M; Swanstrom, R; Dennis, AM;
2023
The Journal of infectious diseases
Model design for nonparametric phylodynamic inference and applications to pathogen surveillance.
Didelot, X; Franceschi, V; FROST, SD W; Dennis, A; Volz, EM;
2023
Virus evolution
Whole-genome analysis to determine the rate and patterns of intra-subtype reassortment among influenza type-A viruses in Africa.
Nabakooza, G; Pastusiak, A; Kateete, DP; Lutwama, JJ; Kitayimbwa, JM; FROST, SD W;
2022
Virus Evolution
Molecular epidemiology of dengue in a setting of low reported endemicity: Kupang, East Nusa Tenggara province, Indonesia.
Hayati, RF; Denis, D; Tallo, KT; Sirait, T; Tukan, J; Santoso, MS; Yohan, B; Haryanto, S; FROST, SD W; Stubbs, SC B; Sasmono, RT;
2021
Transactions of the Royal Society of Tropical Medicine and Hygiene
An investig-ation into the epidemiology of chikungunya virus across neglected regions of Indonesia.
STUBBS, SC B; Johar, E; Yudhaputri, FA; Yohan, B; Santoso, MS; Hayati, RF; Denis, D; Blacklaws, BA; Powers, AM; Sasmono, RT; Myint, KS A; FROST, SD W;
2020
PLOS NEGLECTED TROPICAL DISEASES
Disease control across urban-rural gradients.
Wells, K; Lurgi, M; Collins, B; Lucini, B; Kao, RR; Lloyd, AL; FROST, SD W; Gravenor, MB;
2020
JOURNAL OF THE ROYAL SOCIETY INTERFACE
COVID-19 control across urban-rural gradients
Wells, K; Lurgi, M; Collins, B; Lucini, B; Kao, R; Lloyd, A; FROST, SD W; Gravenor, M;
2020
medRxiv
Producing polished prokaryotic pangenomes with the Panaroo pipeline.
Tonkin-Hill, G; MacAlasdair, N; Ruis, C; Weimann, A; Horesh, G; Lees, JA; Gladstone, RA; Lo, S; Beaudoin, C; Floto, RA; FROST, SD W; Corander, J; Bentley, SD; Parkhill, J;
2020
GENOME BIOLOGY
Assessment of a multiplex PCR and Nanopore-based method for dengue virus sequencing in Indonesia.
STUBBS, SC B; Blacklaws, BA; Yohan, B; Yudhaputri, FA; Hayati, RF; Schwem, B; SalvaƱa, EM; Destura, RV; Lester, JS; Myint, KS; Sasmono, RT; FROST, SD W;
2020
VIROLOGY JOURNAL
Identification of hidden population structure in time-scaled phylogenies
Volz, E; Wiuf, C; Grad, Y; FROST, SD W; Dennis, A; Didelot, X;
2019
bioRxiv
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